Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs17025157 chr2:40353272 C/A 1.12E-5 505 22.73 22.57 7.13 KM Plot
LGG rs17025163 chr2:40353547 C/G 1.01E-5 506 22.6 23.72 7.13 KM Plot
LGG rs17025260 chr2:40377559 C/T 0 506 22.73 21.7 4.18 KM Plot
LGG rs17025271 chr2:40377770 C/T 0 509 22.78 21.7 4.18 KM Plot
LGG rs17038992 chr2:40360802 A/G 1.41E-5 509 7.13 21.7 22.83 KM Plot
LGG rs17071370 chr5:168975431 C/T 1.43E-8 509 21.87 24.07 6.83 KM Plot
LGG rs17071396 chr5:168981829 C/T 5.85E-13 509 10.53 25.52 21.85 KM Plot
LGG rs17071447 chr5:168998529 C/T 1.59E-8 507 22.12 23.85 6.83 KM Plot
LGG rs17072646 chr4:182919818 A/C 3.3E-5 509 21.7 26.4 14.1 KM Plot
LGG rs17099424 chr14:24421841 T/G 4.08E-5 508 23.58 21 15.53 KM Plot
LGG rs17099455 chr14:24423007 G/A 4.03E-5 509 23.58 21.15 15.53 KM Plot
LGG rs17120193 chr10:107899028 A/G 8.88E-5 500 21.43 28.68 13 KM Plot
LGG rs17143253 chr7:20697531 A/G 1.62E-5 490 23.53 22.78 14.37 KM Plot
LGG rs17146584 chr10:9892958 A/G 3.47E-5 506 21.85 26.38 5.05 KM Plot
LGG rs17159950 chr10:875287 T/G 4.9E-7 507 21.7 24.52 14.43 KM Plot